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1.
Comput Intell Neurosci ; 2023: 1701429, 2023.
Article in English | MEDLINE | ID: covidwho-20242314

ABSTRACT

Depression is a disorder that if not treated can hamper the quality of life. EEG has shown great promise in detecting depressed individuals from depression control individuals. It overcomes the limitations of traditional questionnaire-based methods. In this study, a machine learning-based method for detecting depression among young adults using EEG data recorded by the wireless headset is proposed. For this reason, EEG data has been recorded using an Emotiv Epoc+ headset. A total of 32 young adults participated and the PHQ9 screening tool was used to identify depressed participants. Features such as skewness, kurtosis, variance, Hjorth parameters, Shannon entropy, and Log energy entropy from 1 to 5 sec data filtered at different band frequencies were applied to KNN and SVM classifiers with different kernels. At AB band (8-30 Hz) frequency, 98.43 ± 0.15% accuracy was achieved by extracting Hjorth parameters, Shannon entropy, and Log energy entropy from 5 sec samples with a 5-fold CV using a KNN classifier. And with the same features and classifier overall accuracy = 98.10 ± 0.11, NPV = 0.977, precision = 0.984, sensitivity = 0.984, specificity = 0.976, and F1 score = 0.984 was achieved after splitting the data to 70/30 ratio for training and testing with 5-fold CV. From the findings, it can be concluded that EEG data from an Emotiv headset can be used to detect depression with the proposed method.


Subject(s)
Depression , Electroencephalography , Humans , Young Adult , Depression/diagnosis , Electroencephalography/methods , Quality of Life , Machine Learning , Computers , Support Vector Machine
2.
Comput Biol Med ; 162: 107109, 2023 Aug.
Article in English | MEDLINE | ID: covidwho-20230797

ABSTRACT

BACKGROUND AND OBJECTIVE: Early diagnosis of Coronavirus Disease 2019 (COVID-19) can help save patients' lives before the disease turns severe. This can be achieved through an effective and correct treatment protocol. In this paper, a prediction model is proposed to detect infected cases and determine the severity level of the disease. METHODS: The proposed model is based on utilizing proteins and metabolites as features for each patient, which are then analyzed using feature selection methods such as Principal Component Analysis (PCA), Information Gain (IG), and analysis of Variance (ANOVA) to select the most significant features. The model employs three classifiers, namely K-Nearest Neighbor (KNN), Support Vector Machine (SVM), and Random Forest (RF), to predict and classify the severity level of the COVID-19 infection. The proposed model is evaluated using four performance measures: accuracy, sensitivity, specificity, and precision. RESULTS: The experiment results show that the proposed model accuracy can reach 80% using RF classifier with PCA. The PCA selects 22 proteins and 10 metabolites. While ANOVA selects 9 proteins and 5 metabolites. The accuracy reaches 92% after applying RF classifier with the ANOVA. Finally, the accuracy reaches 93% using the RF classifier with only ten features. The selected features are 7 proteins and 3 metabolites. Moreover, it shows that the selected features have a relation to the immune system and respiratory systems. CONCLUSION: The proposed model uses three classifiers and shows promising results by selecting the important features and maximizing the prediction accuracy.


Subject(s)
COVID-19 , Humans , COVID-19/diagnosis , Proteomics , Random Forest , Support Vector Machine , Principal Component Analysis , COVID-19 Testing
3.
Crit Rev Biomed Eng ; 50(5): 39-58, 2022.
Article in English | MEDLINE | ID: covidwho-2304408

ABSTRACT

Since the coronavirus came into existence and brought the entire world to a standstill, there have been drastic changes in people's lives that continue to affect them even as the pandemic recedes. The isolation reduced physical activity and hindered access to non-COVID related healthcare during lockdown and the ensuing months brought increased attention to mental health and the neurological disorders that might have been exacerbated. One nervous system disorder that affects the elderly and needs better awareness is Parkinson's disease. We have machine learning and a growing number of deep learning models to predict, and detect its onset; their scope is not completely exhaustive and can still be optimized. In this research, the authors highlight techniques that have been implemented in recent years for prediction of the disease. Models based on the less redundantly used classifiers-naive Bayes, logistic regression, linear-support vector machine, kernelizing support vector machine, and multilayer perceptron-are initially implemented and compared. Based on limitations of the results, an ensemble stack model of hyper-tuned versions using GridSearchCV out of the top performing supervised classifiers along-with extreme gradient boosting classifier is implemented to further improve overall results. In addition, a convolutional neural network-based model is also implemented, and the results are analyzed using two epoch values to compare the performance of deep learning models. The benchmark datasets-UCI Parkinson's data and the spiral and wave datasets-have been used for machine and deep learning respectively. Performance metrics like accuracy, precision, recall, support, and F1 score are utilized, and confusion matrices and graphs are plotted for visualization. 94.87% accuracy was achieved using the stacking approach.


Subject(s)
Parkinson Disease , Humans , Aged , Parkinson Disease/diagnosis , Bayes Theorem , Machine Learning , Neural Networks, Computer , Support Vector Machine
4.
Comput Intell Neurosci ; 2023: 6531154, 2023.
Article in English | MEDLINE | ID: covidwho-2268404

ABSTRACT

Artificial intelligence (AI) proves decisive in today's rapidly developing society and is a motive force for the evolution of financial technology. As a subdivision of artificial intelligence research, machine learning (ML) algorithm is extensively used in all aspects of the daily operation and development of the supply chain. Using data mining, deductive reasoning, and other characteristics of machine learning algorithms can effectively help decision-makers of enterprises to make more scientific and reasonable decisions by using the existing financial index data. At present, globalization uncertainties such as COVID-19 are intensifying, and supply chain enterprises are facing bankruptcy risk. In the operation process, practical tools are needed to identify and opportunely respond to the threat in the supply chain operation promptly, predict the probability of business failure of enterprises, and take scientific and feasible measures to prevent a financial crisis in good season. Artificial intelligence decision-making technology can help traditional supply chains to transform into intelligent supply chains, realize smart management, and promote supply chain transformation and upgrading. By applying machine learning algorithms, the supply chain can not only identify potential risks in time and adopt scientific and feasible measures to deal with the crisis but also strengthen the connection and cooperation between different enterprises with the advantage of advanced technology to provide overall operation efficiency. On account of this, the paper puts forward an artificial intelligence-based corporate financial-risk-prevention (FRP) model, which includes four stages: data preprocessing, feature selection, feature classification, and parameter adjustment. Firstly, relevant financial index data are collected, and the quality of the selected data is raised through preprocessing; secondly, the chaotic grasshopper optimization algorithm (CGOA) is used to simulate the behavior of grasshoppers in nature to build a mathematical model, and the selected data sets are selected and optimized for features. Then, the support vector machine (SVM) performs classification processing on the quantitative data with reduced features. Empirical risk is calculated using the hinge loss function, and a regular operation is added to optimize the risk structure. Finally, slime mould algorithm (SMA) can optimize the process to improve the efficiency of SVM, making the algorithm more accurate and effective. In this study, Python is used to simulate the function of the corporate business finance risk prevention model. The experimental results show that the CGOA-SVM-SMA algorithm proposed in this paper achieves good results. After calculation, it is found that the prediction and decision-making capabilities are good and better than other comparative models, which can effectively help supply chain enterprises to prevent financial risks.


Subject(s)
Artificial Intelligence , COVID-19 , Humans , COVID-19/prevention & control , Algorithms , Machine Learning , Support Vector Machine
5.
Environ Res ; 220: 115167, 2023 03 01.
Article in English | MEDLINE | ID: covidwho-2284644

ABSTRACT

The use of titanium dioxide (TiO2) nanoparticles in many biological and technical domains is on the rise. There hasn't been much research on the toxicity of titanium dioxide nanoparticles in biological systems, despite their ubiquitous usage. In the current investigation, samples were exposed to various dosages of TiO2 nanoparticles for 4 days, 1 month, and 2 months following treatment. ICP-AES was used to dose TiO2 into the tissues, and the results showed that the kidney had a significant TiO2 buildup. On the other hand, apoptosis of renal tubular cells is one of the most frequent cellular processes contributing to kidney disease (KD). Nevertheless, the impact of macroalgal seaweed extract on KD remains undetermined. In this work, machine learning (ML) approaches have been applied to develop prediction algorithms for acute kidney injury (AKI) by use of titanium dioxide and macroalgae in hospitalized patients. Fifty patients with (AKI) and 50 patients (non-AKI group) have been admitted and considered. Regarding demographic data, and laboratory test data as input parameters, support vector machine (SVM), and random forest (RF) are utilized to build models of AKI prediction and compared to the predictive performance of logistic regression (LR). Due to its strong antioxidant and anti-inflammatory powers, the current research ruled out the potential of using G. oblongata red macro algae as a source for a variety of products for medicinal uses. Despite a high and fast processing of algorithms, logistic regression showed lower overfitting in comparison to SVM, and Random Forest. The dataset is subjected to algorithms, and the categorization of potential risk variables yields the best results. AKI samples showed significant organ defects than non-AKI ones. Multivariate LR indicated that lymphocyte, and myoglobin (MB) ≥ 1000 ng/ml were independent risk parameters for AKI samples. Also, GCS score (95% CI 1.4-8.3 P = 0.014) were the risk parameters for 60-day mortality in samples with AKI. Also, 90-day mortality in AKI patients was significantly high (P < 0.0001). In compared to the control group, there were no appreciable changes in the kidney/body weight ratio or body weight increases. Total thiol levels in kidney homogenate significantly decreased, and histopathological analysis confirmed these biochemical alterations. According to the results, oral TiO2 NP treatment may cause kidney damage in experimental samples.


Subject(s)
Acute Kidney Injury , Seaweed , Humans , Logistic Models , Support Vector Machine , Random Forest , Acute Kidney Injury/chemically induced , Risk Factors , Kidney , Body Weight
6.
J Breath Res ; 17(1)2022 11 24.
Article in English | MEDLINE | ID: covidwho-2246485

ABSTRACT

The spread of coronavirus disease 2019 (COVID-19) results in an increasing incidence and mortality. The typical diagnosis technique for severe acute respiratory syndrome coronavirus 2 infection is reverse transcription polymerase chain reaction, which is relatively expensive, time-consuming, professional, and suffered from false-negative results. A reliable, non-invasive diagnosis method is in urgent need for the rapid screening of COVID-19 patients and controlling the epidemic. Here we constructed an intelligent system based on the volatile organic compound (VOC) biomarkers in human breath combined with machine learning models. The VOC profiles of 122 breath samples (65 of COVID-19 infections and 57 of controls) were identified with a portable gas chromatograph-mass spectrometer. Among them, eight VOCs exhibited significant differences (p< 0.001) between the COVID-19 and the control groups. The cross-validation algorithm optimized support vector machine (SVM) model was employed for the prediction of COVID-19 infection. The proposed SVM model performed a powerful capability in discriminating COVID-19 patients from healthy controls, with an accuracy of 97.3%, a sensitivity of 100%, a specificity of 94.1%, and a precision of 95.2%, and anF1 score of 97.6%. The SVM model was also compared with other common machine models, including artificial neural network,k-nearest neighbor, and logistic regression, and demonstrated obvious superiority in the prediction of COVID-19 infection. Furthermore, user-friendly software was developed based on the optimized SVM model. The developed intelligent platform based on breath analysis provides a new strategy for the point-of-care screening of COVID and shows great potential in clinical application.


Subject(s)
COVID-19 , Volatile Organic Compounds , Humans , Breath Tests/methods , Volatile Organic Compounds/analysis , Support Vector Machine , Biomarkers/analysis
7.
Math Biosci Eng ; 20(3): 5268-5297, 2023 01 11.
Article in English | MEDLINE | ID: covidwho-2232869

ABSTRACT

Though several AI-based models have been established for COVID-19 diagnosis, the machine-based diagnostic gap is still ongoing, making further efforts to combat this epidemic imperative. So, we tried to create a new feature selection (FS) method because of the persistent need for a reliable system to choose features and to develop a model to predict the COVID-19 virus from clinical texts. This study employs a newly developed methodology inspired by the flamingo's behavior to find a near-ideal feature subset for accurate diagnosis of COVID-19 patients. The best features are selected using a two-stage. In the first stage, we implemented a term weighting technique, which that is RTF-C-IEF, to quantify the significance of the features extracted. The second stage involves using a newly developed feature selection approach called the improved binary flamingo search algorithm (IBFSA), which chooses the most important and relevant features for COVID-19 patients. The proposed multi-strategy improvement process is at the heart of this study to improve the search algorithm. The primary objective is to broaden the algorithm's capabilities by increasing diversity and support exploring the algorithm search space. Additionally, a binary mechanism was used to improve the performance of traditional FSA to make it appropriate for binary FS issues. Two datasets, totaling 3053 and 1446 cases, were used to evaluate the suggested model based on the Support Vector Machine (SVM) and other classifiers. The results showed that IBFSA has the best performance compared to numerous previous swarm algorithms. It was noted, that the number of feature subsets that were chosen was also drastically reduced by 88% and obtained the best global optimal features.


Subject(s)
COVID-19 Testing , COVID-19 , Animals , Humans , COVID-19/diagnosis , COVID-19/epidemiology , Algorithms , Support Vector Machine , Birds
8.
Front Public Health ; 10: 920849, 2022.
Article in English | MEDLINE | ID: covidwho-2154835

ABSTRACT

At present, COVID-19 is spreading widely around the world. It causes many health problems, namely, respiratory failure and acute respiratory distress syndrome. Wearable devices have gained popularity by allowing remote COVID-19 detection, contact tracing, and monitoring. In this study, the correlation of photoplethysmogram (PPG) morphology between patients with COVID-19 infection and healthy subjects was investigated. Then, machine learning was used to classify the extracted features between 43 cases and 43 control subjects. The PPG data were collected from 86 subjects based on inclusion and exclusion criteria. The systolic-onset amplitude was 3.72% higher for the case group. However, the time interval of systolic-systolic was 7.69% shorter in the case than in control subjects. In addition, 12 out of 20 features exhibited a significant difference. The top three features included dicrotic-systolic time interval, onset-dicrotic amplitude, and systolic-onset time interval. Nine features extracted by heatmap based on the correlation matrix were fed to discriminant analysis, k-nearest neighbor, decision tree, support vector machine, and artificial neural network (ANN). The ANN showed the best performance with 95.45% accuracy, 100% sensitivity, and 90.91% specificity by using six input features. In this study, a COVID-19 prediction model was developed using multiple PPG features extracted using a low-cost pulse oximeter.


Subject(s)
COVID-19 , Photoplethysmography , COVID-19/diagnosis , Humans , Machine Learning , Neural Networks, Computer , Photoplethysmography/methods , Support Vector Machine
9.
Comput Methods Programs Biomed ; 229: 107295, 2023 Feb.
Article in English | MEDLINE | ID: covidwho-2130496

ABSTRACT

BACKGROUND AND OBJECTIVE: Efforts to alleviate the ongoing coronavirus disease 2019 (COVID-19) crisis showed that rapid, sensitive, and large-scale screening is critical for controlling the current infection and that of ongoing pandemics. METHODS: Here, we explored the potential of vibrational spectroscopy coupled with machine learning to screen COVID-19 patients in its initial stage. Herein presented is a hybrid classification model called grey wolf optimized support vector machine (GWO-SVM). The proposed model was tested and comprehensively compared with other machine learning models via vibrational spectroscopic fingerprinting including saliva FTIR spectra dataset and serum Raman scattering spectra dataset. RESULTS: For the unknown vibrational spectra, the presented GWO-SVM model provided an accuracy, specificity and F1_score value of 0.9825, 0.9714 and 0.9778 for saliva FTIR spectra dataset, respectively, while an overall accuracy, specificity and F1_score value of 0.9085, 0.9552 and 0.9036 for serum Raman scattering spectra dataset, respectively, which showed superiority than those of state-of-the-art models, thereby suggesting the suitability of the GWO-SVM model to be adopted in a clinical setting for initial screening of COVID-19 patients. CONCLUSIONS: Prospectively, the presented vibrational spectroscopy based GWO-SVM model can facilitate in screening of COVID-19 patients and alleviate the medical service burden. Therefore, herein proof-of-concept results showed the chance of vibrational spectroscopy coupled with GWO-SVM model to help COVID-19 diagnosis and have the potential be further used for early screening of other infectious diseases.


Subject(s)
COVID-19 Testing , COVID-19 , Humans , COVID-19/diagnosis , Spectrum Analysis, Raman/methods , Machine Learning , Support Vector Machine
10.
Sensors (Basel) ; 22(21)2022 Oct 23.
Article in English | MEDLINE | ID: covidwho-2081831

ABSTRACT

A systematic review on the topic of automatic detection of COVID-19 using audio signals was performed. A total of 48 papers were obtained after screening 659 records identified in the PubMed, IEEE Xplore, Embase, and Google Scholar databases. The reviewed studies employ a mixture of open-access and self-collected datasets. Because COVID-19 has only recently been investigated, there is a limited amount of available data. Most of the data are crowdsourced, which motivated a detailed study of the various pre-processing techniques used by the reviewed studies. Although 13 of the 48 identified papers show promising results, several have been performed with small-scale datasets (<200). Among those papers, convolutional neural networks and support vector machine algorithms were the best-performing methods. The analysis of the extracted features showed that Mel-frequency cepstral coefficients and zero-crossing rate continue to be the most popular choices. Less common alternatives, such as non-linear features, have also been proven to be effective. The reported values for sensitivity range from 65.0% to 99.8% and those for accuracy from 59.0% to 99.8%.


Subject(s)
COVID-19 , Humans , COVID-19/diagnosis , Neural Networks, Computer , Algorithms , Support Vector Machine , Databases, Factual
11.
Comput Med Imaging Graph ; 102: 102129, 2022 Dec.
Article in English | MEDLINE | ID: covidwho-2083067

ABSTRACT

The emerging field of radiomics that transforms standard-of-care images to quantifiable scalar statistics endeavors to reveal the information hidden in these macroscopic images. The concept of texture is widely used and essential in many radiomic-based studies. Practice usually reduces spatial multidimensional texture matrices, e.g., gray-level co-occurrence matrices (GLCMs), to summary scalar features. These statistical features have been demonstrated to be strongly correlated and tend to contribute redundant information; and does not account for the spatial information hidden in the multivariate texture matrices. This study proposes a novel pipeline to deal with spatial texture features in radiomic studies. A new set of textural features that preserve the spatial information inherent in GLCMs is proposed and used for classification purposes. The set of the new features uses the Wasserstein metric from optimal mass transport theory (OMT) to quantify the spatial similarity between samples within a given label class. In particular, based on a selected subset of texture GLCMs from the training cohort, we propose new representative spatial texture features, which we incorporate into a supervised image classification pipeline. The pipeline relies on the support vector machine (SVM) algorithm along with Bayesian optimization and the Wasserstein metric. The selection of the best GLCM references is considered for each classification label and is performed during the training phase of the SVM classifier using a Bayesian optimizer. We assume that sample fitness is defined based on closeness (in the sense of the Wasserstein metric) and high correlation (Spearman's rank sense) with other samples in the same class. Moreover, the newly defined spatial texture features consist of the Wasserstein distance between the optimally selected references and the remaining samples. We assessed the performance of the proposed classification pipeline in diagnosing the coronavirus disease 2019 (COVID-19) from computed tomographic (CT) images. To evaluate the proposed spatial features' added value, we compared the performance of the proposed classification pipeline with other SVM-based classifiers that account for different texture features, namely: statistical features only, optimized spatial features using Euclidean metric, non-optimized spatial features with Wasserstein metric. The proposed technique, which accounts for the optimized spatial texture feature with Wasserstein metric, shows great potential in classifying new COVID CT images that the algorithm has not seen in the training step. The MATLAB code of the proposed classification pipeline is made available. It can be used to find the best reference samples in other data cohorts, which can then be employed to build different prediction models.


Subject(s)
COVID-19 , Humans , Bayes Theorem , COVID-19/diagnostic imaging , Support Vector Machine , Algorithms , Tomography, X-Ray Computed/methods
12.
Sensors (Basel) ; 22(19)2022 Oct 09.
Article in English | MEDLINE | ID: covidwho-2066357

ABSTRACT

Hyperspectral imaging opens up new opportunities for masked face recognition via discrimination of the spectral information obtained by hyperspectral sensors. In this work, we present a novel algorithm to extract facial spectral-features from different regions of interests by performing computer vision techniques over the hyperspectral images, particularly Histogram of Oriented Gradients. We have applied this algorithm over the UWA-HSFD dataset to extract the facial spectral-features and then a set of parallel Support Vector Machines with custom kernels, based on the cosine similarity and Euclidean distance, have been trained on fly to classify unknown subjects/faces according to the distance of the visible facial spectral-features, i.e., the regions that are not concealed by a face mask or scarf. The results draw up an optimal trade-off between recognition accuracy and compression ratio in accordance with the facial regions that are not occluded.


Subject(s)
Facial Recognition , Algorithms , Support Vector Machine
13.
Sensors (Basel) ; 22(17)2022 Aug 27.
Article in English | MEDLINE | ID: covidwho-2024049

ABSTRACT

This article focuses on the problem of detecting toxicity in online discussions. Toxicity is currently a serious problem when people are largely influenced by opinions on social networks. We offer a solution based on classification models using machine learning methods to classify short texts on social networks into multiple degrees of toxicity. The classification models used both classic methods of machine learning, such as naïve Bayes and SVM (support vector machine) as well ensemble methods, such as bagging and RF (random forest). The models were created using text data, which we extracted from social networks in the Slovak language. The labelling of our dataset of short texts into multiple classes-the degrees of toxicity-was provided automatically by our method based on the lexicon approach to texts processing. This lexicon method required creating a dictionary of toxic words in the Slovak language, which is another contribution of the work. Finally, an application was created based on the learned machine learning models, which can be used to detect the degree of toxicity of new social network comments as well as for experimentation with various machine learning methods. We achieved the best results using an SVM-average value of accuracy = 0.89 and F1 = 0.79. This model also outperformed the ensemble learning by the RF and Bagging methods; however, the ensemble learning methods achieved better results than the naïve Bayes method.


Subject(s)
Machine Learning , Support Vector Machine , Bayes Theorem , Humans
14.
Comput Intell Neurosci ; 2022: 8124053, 2022.
Article in English | MEDLINE | ID: covidwho-2005529

ABSTRACT

The clinical scores are applied to determine the stage of cognitive function in patients with end-stage renal disease (ESRD). However, accurate clinical scores are hard to come by. This paper proposed an integrated prediction framework with GPLWLSV to predict clinical scores of cognitive functions in ESRD patients. GPLWLSV incorporated three parts, graph theoretic algorithm (GTA) and principal component analysis (PCA), whale optimization algorithm with Levy flight (LWOA), and least squares support vector regression machine (LSSVRM). GTA was adopted to extract features from the brain functional networks in ESRD patients, while PCA was used to select features. LSSVRM was built to explore the relationship between the selected features and the clinical scores of ESRD patients. Whale optimization algorithm (WOA) was introduced to select better parameters of the kernel function in LSSVRM; it aims to improve the exploration competence of LSSVRM. Levy flight was used to optimize the ability to jump out of local optima in WOA and improve the convergence of coefficient vectors in WOA, which lead to an increase in the generalization ability and convergence speed of WOA. The results validated that the prediction accuracy of GPLWLSV was higher than that of several comparable frameworks, such as GPSV, GPLSV, and GPWLSV. In particular, the average of root mean square error (RMSE), mean absolute error (MAE), and mean absolute percentage error (MAPE) between the predicted scores and the actual scores of ESRD patients was 2.40, 2.06, and 9.83%, respectively. The proposed framework not only can predict the clinical scores more accurately but also can capture imaging markers associated with decline of cognitive function. It helps to understand the potential relationship between structural changes in the brain and cognitive function of ESRD patients.


Subject(s)
Kidney Failure, Chronic , Support Vector Machine , Algorithms , Animals , Cognition , Kidney Failure, Chronic/diagnosis , Kidney Failure, Chronic/therapy , Principal Component Analysis , Whales
15.
Comput Intell Neurosci ; 2022: 2728866, 2022.
Article in English | MEDLINE | ID: covidwho-2001943

ABSTRACT

Coronavirus disease (COVID-19) has created an unprecedented devastation and the loss of millions of lives globally. Contagious nature and fatalities invariably pose challenges to physicians and healthcare support systems. Clinical diagnostic evaluation using reverse transcription-polymerase chain reaction and other approaches are currently in use. The Chest X-ray (CXR) and CT images were effectively utilized in screening purposes that could provide relevant data on localized regions affected by the infection. A step towards automated screening and diagnosis using CXR and CT could be of considerable importance in these turbulent times. The main objective is to probe a simple threshold-based segmentation approach to identify possible infection regions in CXR images and investigate intensity-based, wavelet transform (WT)-based, and Laws based texture features with statistical measures. Further feature selection strategy using Random Forest (RF) then selected features used to create Machine Learning (ML) representation with Support Vector Machine (SVM) and a Random Forest (RF) to make different COVID-19 from viral pneumonia (VP). The results obtained clearly indicate that the intensity and WT-based features vary in the two pathologies that are better differentiated with the combined features trained using SVM and RF classifiers. Classifier performance measures like an Area Under the Curve (AUC) of 0.97 and by and large classification accuracy of 0.9 using the RF model clearly indicate that the methodology implemented is useful in characterizing COVID-19 and Viral Pneumonia.


Subject(s)
COVID-19 , Pneumonia, Viral , COVID-19/diagnosis , Humans , Machine Learning , Pneumonia, Viral/diagnosis , Support Vector Machine , Tomography, X-Ray Computed/methods
16.
Biosensors (Basel) ; 11(12)2021 Dec 06.
Article in English | MEDLINE | ID: covidwho-1993933

ABSTRACT

Major depressive disorder (MDD) is a global healthcare issue and one of the leading causes of disability. Machine learning combined with non-invasive electroencephalography (EEG) has recently been shown to have the potential to diagnose MDD. However, most of these studies analyzed small samples of participants recruited from a single source, raising serious concerns about the generalizability of these results in clinical practice. Thus, it has become critical to re-evaluate the efficacy of various common EEG features for MDD detection across large and diverse datasets. To address this issue, we collected resting-state EEG data from 400 participants across four medical centers and tested classification performance of four common EEG features: band power (BP), coherence, Higuchi's fractal dimension, and Katz's fractal dimension. Then, a sequential backward selection (SBS) method was used to determine the optimal subset. To overcome the large data variability due to an increased data size and multi-site EEG recordings, we introduced the conformal kernel (CK) transformation to further improve the MDD as compared with the healthy control (HC) classification performance of support vector machine (SVM). The results show that (1) coherence features account for 98% of the optimal feature subset; (2) the CK-SVM outperforms other classifiers such as K-nearest neighbors (K-NN), linear discriminant analysis (LDA), and SVM; (3) the combination of the optimal feature subset and CK-SVM achieves a high five-fold cross-validation accuracy of 91.07% on the training set (140 MDD and 140 HC) and 84.16% on the independent test set (60 MDD and 60 HC). The current results suggest that the coherence-based connectivity is a more reliable feature for achieving high and generalizable MDD detection performance in real-life clinical practice.


Subject(s)
Depressive Disorder, Major , Electroencephalography , Depressive Disorder, Major/diagnosis , Humans , Machine Learning , Support Vector Machine
17.
Front Biosci (Landmark Ed) ; 27(7): 204, 2022 06 27.
Article in English | MEDLINE | ID: covidwho-1965057

ABSTRACT

BACKGROUND: COVID-19 displays an increased mortality rate and higher risk of severe symptoms with increasing age, which is thought to be a result of the compromised immunity of elderly patients. However, the underlying mechanisms of aging-associated immunodeficiency against Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) remains unclear. Epigenetic modifications show considerable changes with age, causing altered gene regulations and cell functions during the aging process. The DNA methylation patterns among patients with coronavirus 2019 disease (COVID-19) who had different ages were compared to explore the effect of aging-associated methylation modifications in SARS-CoV-2 infection. METHODS: Patients with COVID-19 were divided into three groups according to age. Boruta was used on the DNA methylation profiles of the patients to remove irrelevant features and retain essential signature sites to identify substantial aging-associated DNA methylation changes in COVID-19. Next, these features were ranked using the minimum redundancy maximum relevance (mRMR) method, and the feature list generated by mRMR was processed into the incremental feature selection method with decision tree (DT), random forest, k-nearest neighbor, and support vector machine to obtain the key methylation sites, optimal classifier, and decision rules. RESULTS: Several key methylation sites that showed distinct patterns among the patients with COVID-19 who had different ages were identified, and these methylation modifications may play crucial roles in regulating immune cell functions. An optimal classifier was built based on selected methylation signatures, which can be useful to predict the aging-associated disease risk of COVID-19. CONCLUSIONS: Existing works and our predictions suggest that the methylation modifications of genes, such as NHLH2, ZEB2, NWD1, ELOVL2, FGGY, and FHL2, are closely associated with age in patients with COVID-19, and the 39 decision rules extracted with the optimal DT classifier provides quantitative context to the methylation modifications in elderly patients with COVID-19. Our findings contribute to the understanding of the epigenetic regulations of aging-associated COVID-19 symptoms and provide the potential methylation targets for intervention strategies in elderly patients.


Subject(s)
COVID-19 , SARS-CoV-2 , Aged , COVID-19/genetics , DNA Methylation , Humans , Protein Processing, Post-Translational , SARS-CoV-2/genetics , Support Vector Machine
18.
Comput Intell Neurosci ; 2022: 3687598, 2022.
Article in English | MEDLINE | ID: covidwho-1962471

ABSTRACT

A divorce is a legal step taken by married people to end their marriage. It occurs after a couple decides to no longer live together as husband and wife. Globally, the divorce rate has more than doubled from 1970 until 2008, with divorces per 1,000 married people rising from 2.6 to 5.5. Divorce occurs at a rate of 16.9 per 1,000 married women. According to the experts, over half of all marriages ends in divorce or separation in the United States. A novel ensemble learning technique based on advanced machine learning algorithms is proposed in this study. The support vector machine (SVM), passive aggressive classifier, and neural network (MLP) are applied in the context of divorce prediction. A question-based dataset is created by the field specialist. The responses to the questions provide important information about whether a marriage is likely to turn into divorce in the future. The cross-validation is applied in 5 folds, and the performance results of the evaluation metrics are examined. The accuracy score is 100%, and Receiver Operating Characteristic (ROC) curve accuracy score, recall score, the precision score, and the F1 accuracy score are close to 97% confidently. Our findings examined the key indicators for divorce and the factors that are most significant when predicting the divorce.


Subject(s)
Divorce , Support Vector Machine , Developed Countries , Female , Humans , Linear Models , Neural Networks, Computer , United States
19.
Int J Mol Sci ; 21(10)2020 May 19.
Article in English | MEDLINE | ID: covidwho-1934080

ABSTRACT

The vast majority of marketed drugs are orally administrated. As such, drug absorption is one of the important drug metabolism and pharmacokinetics parameters that should be assessed in the process of drug discovery and development. A nonlinear quantitative structure-activity relationship (QSAR) model was constructed in this investigation using the novel machine learning-based hierarchical support vector regression (HSVR) scheme to render the extremely complicated relationships between descriptors and intestinal permeability that can take place through various passive diffusion and carrier-mediated active transport routes. The predictions by HSVR were found to be in good agreement with the observed values for the molecules in the training set (n = 53, r2 = 0.93, q CV 2 = 0.84, RMSE = 0.17, s = 0.08), test set (n = 13, q2 = 0.75-0.89, RMSE = 0.26, s = 0.14), and even outlier set (n = 8, q2 = 0.78-0.92, RMSE = 0.19, s = 0.09). The built HSVR model consistently met the most stringent criteria when subjected to various statistical assessments. A mock test also assured the predictivity of HSVR. Consequently, this HSVR model can be adopted to facilitate drug discovery and development.


Subject(s)
Computer Simulation , Intestines/physiology , Support Vector Machine , Animals , Humans , Permeability , Rats , Regression Analysis , Reproducibility of Results
20.
Front Public Health ; 10: 869238, 2022.
Article in English | MEDLINE | ID: covidwho-1933896

ABSTRACT

Early diagnosis, prioritization, screening, clustering, and tracking of patients with COVID-19, and production of drugs and vaccines are some of the applications that have made it necessary to use a new style of technology to involve, manage, and deal with this epidemic. Strategies backed by artificial intelligence (A.I.) and the Internet of Things (IoT) have been undeniably effective to understand how the virus works and prevent it from spreading. Accordingly, the main aim of this survey is to critically review the ML, IoT, and the integration of IoT and ML-based techniques in the applications related to COVID-19, from the diagnosis of the disease to the prediction of its outbreak. According to the main findings, IoT provided a prompt and efficient approach to tracking the disease spread. On the other hand, most of the studies developed by ML-based techniques aimed at the detection and handling of challenges associated with the COVID-19 pandemic. Among different approaches, Convolutional Neural Network (CNN), Support Vector Machine, Genetic CNN, and pre-trained CNN, followed by ResNet have demonstrated the best performances compared to other methods.


Subject(s)
COVID-19 , Internet of Things , Machine Learning , Artificial Intelligence , COVID-19/epidemiology , Humans , Neural Networks, Computer , Pandemics/prevention & control , Support Vector Machine
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